PDBsum entry 5cw3 Go to PDB code:  Tunnel analysis for: 5cw3 calculated with MOLE 2.0 PDB id 5cw3 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   10 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.25 1.31 44.4 -0.09 0.07 17.5 78 6 2 2 12 1 1 1   2 1.24 1.31 44.4 0.05 0.00 12.9 80 5 2 3 13 1 1 1   3 1.25 1.30 44.7 -0.01 0.10 17.4 79 5 2 2 12 1 1 0   4 1.24 1.31 44.8 0.28 0.08 12.2 81 4 2 3 13 1 1 0   5 1.11 2.68 45.8 0.27 0.16 15.8 82 5 2 2 14 1 1 0   6 1.56 1.56 15.2 -0.87 -0.20 23.0 88 3 2 0 5 0 0 0   7 1.45 1.81 15.4 -2.16 -0.57 29.2 82 3 2 0 4 0 0 1   8 1.45 1.80 16.8 -0.85 -0.36 19.6 82 2 2 0 4 0 0 1   9 1.38 1.60 15.0 -1.69 -0.49 28.8 91 3 2 1 3 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.