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PDBsum entry 5cpi
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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 5cpi calculated with MOLE 2.0 PDB id
5cpi
Pores calculated on whole structure Pores calculated excluding ligands
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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.21 3.21 29.8 -1.56 -0.48 17.1 85 3 0 3 1 0 0 0  DT 18 I DG 89 I DA 90 I DT 92 I DC 93 I DT 94 I
DT 49 J DG 51 J DA 52 J DA 53 J
2 3.38 3.64 31.8 -1.07 -0.75 8.4 81 1 0 2 1 0 0 0  DG 51 I DG 52 I DT 53 I DA 57 I DA 61 I DA 62 I D
A 63 I DT 64 I DG 65 I DG 133 I DA 134 I DT 18 J
DC 19 J DT 85 J DT 86 J DG 87 J DA 88 J DG 89 J
DT 90 J DA 93 J DA 94 J DC 95 J
3 1.44 1.83 33.0 -2.05 -0.63 19.2 91 4 1 3 1 0 0 0  DT 18 I DG 102 I DT 110 I DG 41 J DT 49 J
4 2.66 3.28 57.4 -1.49 -0.67 16.7 83 7 1 2 1 0 0 0  DT 18 I DG 28 I DT 37 I DG 102 I DA 103 I DA 113
I DA 114 I DT 115 I DT 38 J DT 39 J DC 40 J DT 49
J DC 114 J DC 115 J
5 2.02 2.02 59.7 -2.49 -0.36 27.5 77 14 2 2 1 2 2 0  DG 38 I DA 29 J
6 2.10 4.60 60.2 -2.30 -0.40 25.7 79 11 4 3 2 2 1 0  DG 38 I DA 29 J
7 1.43 1.83 60.8 -1.79 -0.70 19.3 83 7 2 1 0 0 0 0  DG 28 I DT 37 I DG 102 I DA 103 I DT 110 I DA 113
I DA 114 I DT 115 I DT 38 J DT 39 J DC 40 J DG 41
J DC 114 J DC 115 J
8 3.18 4.65 62.2 -1.43 -0.55 17.1 85 7 1 4 2 1 0 0  DG 38 I DA 48 I DA 57 I DT 115 I DG 123 I DG 133
I DA 134 I DT 18 J DC 19 J DA 29 J DA 93 J DA 94 J
9 1.80 1.80 65.0 -1.17 -0.74 13.3 82 5 1 1 0 0 0 0  DT 26 I DT 27 I DG 28 I DT 37 I DA 103 I DT 104 I
DT 105 I DA 113 I DA 114 I DT 115 I DT 38 J DT 39
J DC 40 J DA 47 J DC 114 J DC 115 J DT 125 J
10 2.02 2.02 68.5 -2.35 -0.38 25.5 77 12 3 3 2 3 1 0  DT 18 I DT 49 J DA 124 J
11 1.87 2.05 72.7 -1.57 -0.69 17.1 89 5 0 1 0 0 0 0  DG 38 I DA 39 I DA 40 I DT 41 I DG 42 I DG 43 I
DT 115 I DA 29 J DC 105 J DT 107 J DT 108 J DC
109 J DA 110 J DT 111 J DT 112 J
12 1.13 2.20 74.2 -2.07 -0.45 22.6 78 8 5 4 3 3 0 0  DT 18 I DT 49 J DA 124 J
13 2.04 2.16 86.3 -1.37 -0.64 17.2 77 6 1 1 2 0 1 0  DA 57 I DC 58 I DT 59 I DA 68 I DT 69 I DG 133 I
DA 134 I DT 141 I DC 142 I DT 143 I DC 9 J DC 10
J DA 11 J DG 74 J DA 93 J DA 94 J
14 2.41 2.75 91.0 -1.52 -0.43 15.9 82 8 4 9 4 6 0 0  DT 18 I DA 48 I DA 57 I DG 123 I DG 133 I DA 134
I DT 18 J DC 19 J DT 49 J DA 93 J DA 94 J DA 124 J
15 2.04 2.04 94.0 -1.78 -0.51 18.4 81 13 2 6 2 2 2 0  DA 48 I DA 57 I DG 123 I DG 133 I DA 134 I DT 18
J DC 19 J DA 93 J DA 94 J
16 2.08 4.66 94.5 -1.61 -0.54 16.5 84 10 4 7 3 2 1 0  DA 48 I DA 57 I DG 123 I DG 133 I DA 134 I DT 18
J DC 19 J DA 93 J DA 94 J
17 1.80 1.82 95.1 -1.25 -0.48 16.3 88 7 1 6 2 1 0 0  DG 38 I DA 48 I DA 117 I DT 118 I DT 119 I DT 120
I DT 121 I DG 123 I DA 124 I DA 21 J DT 22 J DT
23 J DA 29 J DG 31 J DA 32 J DT 33 J DT 34 J
18 1.77 1.78 97.7 -0.91 -0.61 11.3 96 4 0 6 2 0 0 0  DA 48 I DA 57 I DA 117 I DT 118 I DT 119 I DT 120
I DT 121 I DG 123 I DA 124 I DG 133 I DA 134 I DT
18 J DC 19 J DA 21 J DT 22 J DT 23 J DG 31 J DA
32 J DT 33 J DT 34 J DA 93 J DA 94 J
19 1.84 2.07 108.4 -2.09 -0.53 24.9 84 9 4 6 5 0 0 0  DT 69 I DT 70 I DT 71 I DT 72 I DC 73 I DT 71 J
DT 72 J DG 74 J DA 75 J
20 1.85 1.85 112.6 -1.57 -0.61 17.2 86 8 2 6 2 1 0 0  DG 38 I DA 48 I DT 115 I DG 123 I DC 132 I DG 133
I DG 137 I DG 138 I DA 139 I DA 140 I DT 141 I DC
10 J DA 11 J DT 12 J DC 19 J DA 29 J DA 93 J
21 2.89 2.89 113.8 -1.52 -0.60 15.8 84 8 1 7 2 1 0 0  DG 38 I DA 48 I DG 51 I DG 52 I DT 53 I DA 61 I D
A 62 I DA 63 I DT 64 I DG 65 I DT 115 I DG 123 I
DC 19 J DA 29 J DT 85 J DT 86 J DG 87 J DA 88 J
DG 89 J DT 90 J DA 93 J DA 94 J DC 95 J
22 1.42 1.90 114.1 -2.15 -0.47 22.7 85 10 1 1 1 1 0 0  DG 28 I DA 29 I DA 30 I DT 31 I DG 32 I DT 41 I
DG 42 I DG 43 I DG 102 I DA 103 I DT 110 I DT 39
J DC 40 J DG 41 J DT 107 J DT 108 J DC 109 J DA
110 J DT 111 J DT 112 J DT 113 J
23 1.90 2.04 113.9 -1.22 -0.68 13.0 93 7 0 6 2 0 0 0  DA 40 I DT 41 I DG 42 I DG 43 I DA 48 I DA 57 I
DG 123 I DG 133 I DA 134 I DT 18 J DC 19 J DA 93
J DA 94 J DT 103 J DC 104 J DC 105 J DT 107 J DT
108 J DC 109 J DA 110 J DT 111 J DT 112 J
24 1.83 1.83 118.4 -1.49 -0.53 16.0 85 8 0 1 1 1 0 0  DT 26 I DT 27 I DG 28 I DA 29 I DA 30 I DT 31 I
DG 32 I DT 41 I DG 42 I DG 43 I DA 103 I DT 104 I
DT 105 I DT 39 J DC 40 J DA 47 J DT 107 J DT 108
J DC 109 J DA 110 J DT 111 J DT 112 J DT 113 J DT
125 J
25 2.97 3.39 126.0 -1.91 -0.57 22.4 79 8 1 2 3 0 2 0  DG 9 I DG 10 I DA 16 I DT 69 I DT 70 I DT 71 I DT
72 I DC 73 I DG 74 I DC 58 J DC 59 J DT 69 J DG
70 J DT 71 J DT 72 J DG 74 J DA 75 J DG 133 J DA
134 J DA 135 J DT 136 J DT 142 J DG 143 J DG 144 J
26 2.02 2.03 140.6 -2.07 -0.55 23.0 83 16 1 7 5 0 2 0  DT 69 I DT 70 I DT 71 I DT 72 I DC 73 I DT 71 J
DT 72 J DG 74 J DA 75 J
27 1.80 1.85 147.0 -1.09 -0.60 12.8 95 7 0 8 2 0 0 0  DA 40 I DT 41 I DG 42 I DG 43 I DA 48 I DA 117 I
DT 118 I DT 119 I DT 120 I DT 121 I DG 123 I DA
124 I DA 21 J DT 22 J DT 23 J DG 31 J DA 32 J DT
33 J DT 34 J DT 103 J DC 104 J DC 105 J DT 107 J
DT 108 J DC 109 J DA 110 J DT 111 J DT 112 J
28 1.80 1.85 149.2 -1.10 -0.66 11.0 92 5 0 9 2 0 0 0  DA 48 I DG 51 I DG 52 I DT 53 I DA 61 I DA 62 I D
A 63 I DT 64 I DG 65 I DA 117 I DT 118 I DT 119 I
DT 120 I DT 121 I DG 123 I DA 124 I DC 19 J DA 21
J DT 22 J DT 23 J DG 31 J DA 32 J DT 33 J DT 34 J
DT 85 J DT 86 J DG 87 J DA 88 J DG 89 J DT 90 J D
A 93 J DA 94 J DC 95 J
29 3.17 4.59 189.7 -1.48 -0.50 19.1 82 13 2 7 6 1 0 0  DG 38 I DA 48 I DG 51 I DG 52 I DT 53 I DA 62 I
DT 69 I DT 70 I DT 71 I DT 72 I DC 73 I DT 115 I
DG 123 I DC 19 J DA 29 J DT 71 J DT 72 J DG 74 J
DA 75 J DT 80 J DC 81 J DT 90 J DA 93 J DA 94 J
DC 95 J
30 1.80 1.81 225.1 -1.17 -0.54 15.5 87 10 1 9 6 0 0 0  DA 48 I DG 51 I DG 52 I DT 53 I DA 62 I DT 69 I
DT 70 I DT 71 I DT 72 I DC 73 I DA 117 I DT 118 I
DT 119 I DT 120 I DT 121 I DG 123 I DA 124 I DC
19 J DA 21 J DT 22 J DT 23 J DG 31 J DA 32 J DT
33 J DT 34 J DT 71 J DT 72 J DG 74 J DA 75 J DT
80 J DC 81 J DT 90 J DA 93 J DA 94 J DC 95 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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