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PDBsum entry 5coq
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Tunnel analysis for: 5coq calculated with  MOLE 2.0
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PDB id
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5coq
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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2 tunnels,
coloured by tunnel radius |
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8 tunnels,
coloured by
tunnel radius
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8 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.23 |
2.51 |
57.7 |
0.12 |
0.31 |
9.5 |
78 |
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4 |
3 |
4 |
10 |
6 |
1 |
0 |
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2 |
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1.26 |
1.66 |
59.8 |
-0.16 |
0.14 |
11.6 |
80 |
5 |
3 |
6 |
9 |
4 |
0 |
0 |
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3 |
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1.24 |
1.41 |
26.1 |
0.84 |
0.14 |
6.4 |
77 |
3 |
1 |
1 |
7 |
3 |
0 |
0 |
NAD 300 B TCU 301 B
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4 |
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1.21 |
1.36 |
29.0 |
0.64 |
0.01 |
5.7 |
80 |
3 |
0 |
2 |
8 |
2 |
0 |
0 |
NAD 300 B TCU 301 B
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5 |
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1.06 |
1.46 |
29.8 |
0.52 |
0.02 |
8.1 |
85 |
2 |
1 |
2 |
8 |
2 |
0 |
0 |
NAD 300 B TCU 301 B
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6 |
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1.08 |
1.45 |
32.7 |
0.37 |
-0.11 |
7.4 |
88 |
3 |
0 |
3 |
9 |
1 |
0 |
0 |
NAD 300 B TCU 301 B
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7 |
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1.21 |
1.35 |
41.7 |
0.47 |
0.25 |
6.8 |
81 |
3 |
1 |
2 |
11 |
3 |
1 |
0 |
NAD 300 B TCU 301 B
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8 |
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1.09 |
1.47 |
45.4 |
0.29 |
0.18 |
8.0 |
86 |
3 |
1 |
3 |
12 |
2 |
1 |
0 |
NAD 300 B TCU 301 B
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program