PDBsum entry 5cbk Go to PDB code:  Tunnel analysis for: 5cbk calculated with MOLE 2.0 PDB id 5cbk Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.54 1.54 21.7 1.76 0.79 1.6 80 1 0 2 8 2 0 2  PE3 302 A PE3 303 A 2 1.54 1.55 22.2 2.01 0.85 2.8 77 2 0 1 7 3 0 1  PE3 302 A PE3 303 A 3 1.14 1.14 27.1 1.79 0.84 2.1 74 2 0 1 9 3 0 1  PE3 302 A PE3 303 A 4 1.24 1.57 27.3 1.05 0.67 7.7 80 2 0 2 8 3 0 1  PE3 302 A PE3 303 A CL 304 A 5 1.24 1.59 27.7 1.10 0.69 10.0 77 3 0 1 7 4 0 0  PE3 302 A PE3 303 A CL 304 A 6 1.34 1.47 28.7 0.71 0.40 4.5 78 2 0 3 6 3 0 2  PE3 302 A PE3 303 A 7 1.14 1.14 33.7 0.84 0.46 3.7 75 2 0 3 8 3 0 2  PE3 302 A PE3 303 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.