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PDBsum entry 5ca7

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 5ca7 calculated with MOLE 2.0 PDB id
5ca7
Pores calculated on whole structure Pores calculated excluding ligands

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2 pores, coloured by radius 2 pores, coloured by radius 2 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.30 1.34 32.2 -1.07 -0.31 11.4 80 2 1 3 3 2 0 0  DG 3 P DT 4 P DA 5 P DA 8 T DC 9 T DG 11 T
2 1.40 1.63 27.7 -0.83 -0.21 15.4 84 2 2 2 5 2 0 0  DG 6 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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