spacer
spacer

PDBsum entry 5ca0

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 5ca0 calculated with MOLE 2.0 PDB id
5ca0
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
7 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.37 1.60 41.1 -2.61 -0.73 27.0 80 5 4 2 0 1 0 0  
2 3.27 3.47 52.3 -2.09 -0.40 22.8 87 7 2 5 2 1 0 0  
3 1.34 1.65 58.2 -2.00 -0.33 25.7 83 6 4 3 2 2 0 0  
4 1.50 2.96 88.0 -1.82 -0.46 21.7 82 9 4 6 4 1 1 0  GOL 504 A
5 2.08 2.07 57.1 -1.33 -0.33 16.4 80 5 6 5 4 2 2 0  
6 1.55 1.58 200.1 -1.83 -0.52 18.7 85 12 10 16 7 4 3 0  
7 1.83 2.02 28.6 -1.06 -0.53 10.3 88 1 2 4 4 0 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer