PDBsum entry 5c9a Go to PDB code:  Tunnel analysis for: 5c9a calculated with MOLE 2.0 PDB id 5c9a Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.38 19.5 -1.09 -0.05 11.5 95 2 2 4 2 1 0 0  CL 304 A 2 1.41 1.55 22.2 -1.07 -0.34 10.0 94 1 2 4 3 1 0 0  CL 304 A 3 1.46 1.46 16.2 -1.45 -0.14 12.0 78 1 2 2 1 2 0 0   4 1.46 1.46 17.1 -1.58 -0.21 12.1 76 2 1 2 1 2 0 0   5 1.48 1.49 19.1 -0.76 -0.40 15.2 77 1 2 2 2 2 0 0   6 1.50 2.07 19.2 -0.92 -0.45 14.8 76 1 2 1 1 3 0 0  K 302 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.