PDBsum entry 5c5o Go to PDB code:  Tunnel analysis for: 5c5o calculated with MOLE 2.0 PDB id 5c5o Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.89 1.89 24.7 -2.28 -0.62 28.0 84 4 3 1 2 0 0 0   2 1.88 1.89 24.8 -1.98 -0.67 23.9 84 4 3 1 2 0 0 0   3 1.88 1.88 25.6 -1.88 -0.56 22.7 77 4 1 1 2 0 0 0   4 1.86 1.86 25.7 -1.72 -0.60 20.2 77 4 1 1 2 0 0 0   5 1.86 1.86 27.7 -1.98 -0.51 26.4 82 5 2 1 2 0 0 0   6 1.87 1.87 27.8 -1.85 -0.55 24.5 82 5 2 1 2 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.