PDBsum entry 5c4x Go to PDB code:  Pore analysis for: 5c4x calculated with MOLE 2.0 PDB id 5c4x Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.51 1.58 71.0 -1.83 -0.57 27.6 84 8 13 4 8 0 2 0   2 3.55 3.55 81.2 -1.95 -0.66 22.9 89 7 8 6 5 0 1 0  DT 26 S DG 27 S DT 29 S DT 30 S DA 31 S DT 32 S DG 6 U DA 7 U DT 8 U DA 9 U 3 3.56 3.56 85.3 -1.42 -0.70 12.9 83 3 2 3 1 1 1 0  DA 13 S DC 15 S DT 16 S DA 17 S DC 19 S DA 21 S DT 26 S DG 27 S DC 28 S DT 29 S DT 30 S DA 31 S DT 32 S DG 6 U DA 7 U DT 8 U DA 9 U DA 10 U DG 11 U DC 12 U DA 13 U 4 3.68 4.29 86.9 -1.98 -0.63 22.2 86 8 8 7 5 1 2 0  DA 13 S DC 15 S DT 16 S DA 17 S DC 19 S DA 21 S DT 26 S DA 9 U DA 10 U DG 11 U DC 12 U DA 13 U 5 2.03 3.27 89.7 -1.47 -0.42 20.9 83 5 7 4 3 2 1 0  DA 13 S DC 15 S DT 16 S DA 17 S DT 18 S 6 1.65 1.77 93.2 -2.04 -0.56 29.8 87 14 13 7 10 0 1 0   7 2.19 3.24 110.8 -1.96 -0.58 26.0 84 13 11 4 6 0 1 0  DT 26 S DG 27 S DT 29 S DT 30 S DA 31 S DT 32 S DG 6 U DA 7 U DT 8 U DA 9 U 8 1.30 1.30 120.9 -1.30 -0.26 17.2 79 6 8 8 8 6 4 0  DT 29 S DT 30 S DA 31 S DT 32 S DG 6 U DA 7 U DT 8 U 9 3.03 3.03 124.9 -1.68 -0.42 20.9 84 12 6 5 8 2 3 0  U 2 R C 3 R G 4 R A 5 R G 6 R A 7 R DA 13 S DC 15 S DT 16 S DA 17 S DC 19 S DC 16 U DG 17 U DA 18 U DC 23 U DT 24 U DC 25 U DG 26 U 10 1.59 2.19 139.7 -1.96 -0.49 25.0 82 14 8 6 8 2 0 0  DC 15 S DT 16 S DA 17 S DT 18 S DC 19 S DA 21 S DG 22 S DA 24 S DG 25 S DG 11 U DC 12 U DA 13 U 11 2.71 2.77 142.0 -1.34 -0.49 18.7 91 14 6 13 8 0 1 0  DT 30 S DA 31 S DT 32 S DG 6 U DA 7 U DT 8 U 12 1.47 1.40 141.6 -1.59 -0.41 21.5 86 14 7 12 7 0 0 0  DT 30 S DA 31 S DT 32 S DG 6 U DA 7 U DT 8 U 13 2.06 3.30 148.1 -2.02 -0.57 27.9 84 15 11 7 7 0 1 0  DA 13 S DC 15 S DT 16 S DA 17 S DC 19 S DA 21 S DG 22 S DA 24 S DG 25 S DG 11 U DC 12 U DA 13 U 14 1.27 1.44 148.4 -1.55 -0.33 18.3 78 9 9 10 7 6 6 0  DA 13 S DC 15 S DT 16 S DA 17 S DC 19 S DA 21 S DT 26 S DT 8 U DA 9 U DA 10 U DG 11 U DC 12 U DA 13 U 15 1.65 1.72 157.1 -1.70 -0.62 22.0 85 15 15 7 7 0 2 0  DT 26 S DG 27 S DT 29 S DT 30 S DG 39 S DA 3 U DC 4 U DC 5 U DG 6 U DA 7 U DT 8 U DA 9 U 16 1.91 1.90 159.6 -2.00 -0.61 18.4 87 13 8 16 7 2 2 0  MG 1803 A A 5 R G 6 R A 10 R DA 13 S DC 15 S DT 16 S DA 17 S DC 19 S DC 16 U DG 17 U DA 18 U 17 1.89 1.92 164.5 -1.92 -0.59 16.6 90 13 7 20 6 3 1 0  MG 1803 A A 5 R G 6 R A 10 R DA 13 S DC 15 S DT 16 S DA 17 S DC 19 S DC 16 U DG 17 U DA 18 U 18 1.26 1.35 163.2 -1.76 -0.36 24.6 80 18 16 10 12 5 5 0  DT 8 U DA 9 U 19 2.26 2.52 163.5 -1.95 -0.45 23.3 80 10 12 6 4 5 0 0  DT 16 S 20 2.12 2.36 170.6 -2.04 -0.49 27.4 83 24 17 15 11 3 2 0   21 2.17 2.51 174.7 -1.67 -0.34 23.6 79 19 15 6 10 7 4 0   22 2.02 2.00 173.7 -2.06 -0.47 27.6 83 21 12 6 13 3 3 0  U 2 R C 3 R G 4 R A 5 R G 6 R A 7 R DC 23 S DA 24 S DG 17 U DA 18 U DC 23 U DT 24 U DC 25 U DG 26 U 23 2.18 2.43 175.5 -1.98 -0.48 25.1 85 23 16 19 10 4 1 0   24 1.88 1.89 177.9 -1.32 -0.38 13.4 83 12 6 10 9 6 4 0  MG 1803 A A 5 R G 6 R A 10 R DA 13 S DC 15 S DT 16 S DA 17 S DC 19 S DC 16 U DG 17 U DA 18 U 25 1.17 1.70 181.0 -1.48 -0.38 21.4 85 13 11 11 10 1 3 0  C 3 R G 4 R A 5 R G 6 R A 7 R DA 13 S DC 15 S DT 16 S DA 17 S DC 19 S DC 16 U DG 17 U DA 18 U DC 23 U DT 24 U 26 2.88 2.84 177.4 -1.59 -0.36 21.2 83 12 7 6 5 5 0 0  DC 6 S DC 7 S DG 8 S DT 9 S DG 10 S DG 11 S DA 12 S DA 13 S DG 14 S DA 28 U DC 29 U 27 1.52 1.46 187.3 -1.91 -0.53 21.8 84 17 9 13 5 1 1 0  DA 13 S DC 15 S DT 16 S DA 17 S DC 19 S DA 21 S DT 26 S DG 27 S DC 28 S DT 29 S DA 7 U DT 8 U DA 9 U DA 10 U DG 11 U DC 12 U DA 13 U 28 1.46 1.37 212.7 -2.05 -0.51 26.2 84 27 18 14 10 0 1 0  DT 26 S DG 27 S DT 29 S DA 7 U DT 8 U DA 9 U 29 2.92 2.89 224.9 -1.89 -0.37 23.8 84 20 10 11 11 6 3 0  U 2 R DC 6 S DG 26 U DA 27 U 30 2.91 2.91 300.7 -2.38 -0.47 29.1 83 28 18 13 7 6 4 0  U 2 R DC 6 S DG 26 U DA 27 U Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.