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PDBsum entry 5c3e
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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 5c3e calculated with MOLE 2.0 PDB id
5c3e
Pores calculated on whole structure Pores calculated excluding ligands
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32 pores, coloured by radius 19 pores, coloured by radius 19 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.60 2.65 52.4 -2.19 -0.60 26.2 81 6 3 2 1 0 2 0  U 2 R C 3 R G 4 R A 5 R G 6 R A 7 R DG 17 U DA 18
U DC 23 U DT 24 U DC 25 U
2 1.14 2.13 70.9 -0.91 0.03 20.4 69 5 5 1 4 4 4 1  
3 3.37 3.41 86.6 -1.72 -0.59 18.8 87 7 2 3 2 0 1 0  A 5 R DA 24 S DT 26 S DG 27 S DT 29 S DT 30 S DA
31 S DT 32 S DG 6 U DA 7 U DT 8 U DA 9 U DG 11 U
DC 12 U DA 13 U DA 15 U DG 17 U
4 1.57 1.73 97.4 -1.67 -0.48 25.1 81 7 14 6 6 4 0 0  
5 2.76 3.30 103.8 -1.02 -0.34 14.4 91 9 7 11 7 1 3 1  
6 2.79 2.79 113.9 -1.65 -0.44 18.0 88 7 5 11 9 2 0 1  DT 30 S DA 31 S DT 32 S DG 6 U DA 7 U
7 1.13 1.99 120.5 -1.08 -0.49 16.7 86 4 5 6 9 0 2 1  DG 27 S DT 29 S DT 30 S DA 31 S DT 32 S DG 6 U DA
7 U DT 8 U DA 9 U
8 1.59 1.90 124.1 -2.13 -0.53 25.1 83 9 7 9 6 2 0 1  
9 1.19 1.42 130.6 -2.24 -0.56 26.8 80 14 10 7 4 2 2 0  
10 1.19 1.99 138.6 -1.24 -0.36 17.8 77 7 8 6 7 4 5 0  DG 27 S DT 29 S DT 30 S DA 31 S DT 32 S DG 6 U DA
7 U DT 8 U DA 9 U
11 1.59 1.96 139.2 -2.08 -0.42 22.4 82 16 9 12 9 4 6 0  
12 1.30 1.77 143.0 -1.27 -0.38 18.7 86 9 7 7 11 0 3 1  A 5 R DA 24 S DT 26 S DG 27 S DA 9 U DG 11 U DC
12 U DA 13 U DA 15 U DG 17 U
13 1.73 1.70 153.1 -1.80 -0.61 16.2 91 13 11 19 6 3 1 0  MG 1803 A A 5 R G 6 R A 10 R DG 17 U DA 18 U
14 1.28 1.83 161.0 -1.35 -0.31 19.1 78 12 11 7 9 4 6 0  A 5 R DA 24 S DT 26 S DG 27 S DA 9 U DG 11 U DC
12 U DA 13 U DA 15 U DG 17 U
15 1.99 3.12 159.1 -2.04 -0.42 25.0 85 15 11 9 6 2 3 0  A 5 R DA 24 S DA 15 U DG 17 U
16 1.38 1.53 185.8 -2.00 -0.44 22.1 79 17 13 10 7 7 1 0  
17 2.27 2.36 214.1 -1.81 -0.60 18.7 87 22 15 23 7 2 2 0  DG 27 S DT 29 S DT 30 S DA 31 S DT 32 S DG 6 U DA
7 U DT 8 U DA 9 U
18 1.42 1.43 39.7 -1.63 -0.52 22.3 92 3 2 2 2 0 0 0  
19 1.32 1.48 53.1 -1.41 -0.14 18.6 86 3 1 3 3 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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