PDBsum entry 5c3e Go to PDB code:  Tunnel analysis for: 5c3e calculated with MOLE 2.0 PDB id 5c3e Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 1.49 53.1 -2.27 -0.68 25.7 86 8 7 2 2 0 0 0  G 8 R G 9 R A 10 R DC 21 U DT 22 U DC 23 U 2 1.63 1.63 65.8 -1.35 -0.56 15.4 83 6 3 3 2 2 1 0  G 4 R A 5 R G 6 R A 7 R G 8 R G 9 R A 10 R DC 21 U DT 22 U DC 23 U DT 24 U DC 25 U DG 26 U 3 1.62 1.62 70.9 -1.30 -0.49 15.3 85 6 4 4 2 1 0 0  A 7 R G 8 R G 9 R A 10 R DC 21 U DT 22 U DC 23 U DT 24 U DC 25 U DG 26 U DA 27 U 4 1.52 1.78 84.6 -1.59 -0.57 13.6 87 8 5 10 3 2 1 0  MG 1803 A A 7 R G 8 R G 9 R A 10 R DA 18 U DC 21 U DT 22 U DC 23 U DT 24 U 5 1.33 2.00 20.8 -0.32 0.20 19.6 68 3 0 0 3 2 0 0   6 1.27 1.83 18.5 -1.51 -0.22 15.6 78 3 0 4 2 2 2 1   7 1.17 1.88 23.7 2.06 0.67 6.1 82 1 1 1 8 0 2 0   8 1.17 1.60 30.3 2.41 0.73 2.5 84 1 0 2 12 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.