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PDBsum entry 5bw2

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 5bw2 calculated with MOLE 2.0 PDB id
5bw2
Pores calculated on whole structure Pores calculated excluding ligands

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10 pores, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.32 1.33 54.2 -0.57 -0.18 10.0 77 2 2 3 5 5 0 0  
2 1.31 1.30 64.2 -0.34 -0.14 3.5 76 0 1 6 6 6 2 1  4VU 301 A
3 1.27 1.26 64.5 -0.89 -0.38 8.6 80 3 3 4 6 4 3 0  
4 1.38 1.38 64.6 -0.54 -0.14 3.7 77 0 1 6 4 4 4 1  4VU 301 B
5 1.21 1.26 67.6 -0.43 -0.15 3.6 77 0 2 7 6 7 2 1  4VU 301 B
6 1.87 2.07 73.7 -1.52 -0.64 17.8 84 3 6 6 2 3 1 1  
7 1.29 1.29 74.3 -0.20 -0.02 2.3 75 0 0 6 6 4 4 1  4VU 301 A
8 1.55 1.51 103.9 -1.23 -0.52 14.5 82 5 7 8 4 5 1 1  
9 1.82 2.05 113.3 -1.34 -0.49 13.7 85 5 6 8 4 4 1 0  
10 1.44 1.44 131.8 -1.00 -0.33 13.5 81 6 8 7 5 8 1 0  
11 1.24 1.40 165.9 -1.43 -0.49 7.6 80 5 7 17 10 9 7 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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