PDBsum entry 5axi

Pore analysis for: 5axi calculated with

MOLE 2.0

PDB id

5axi

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

11 pores, coloured by radius

15 pores, coloured by radius

15 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.69

2.88

33.7

-2.95

-0.74

30.0

80

4

2

3

2

0

0

0

2

1.44

1.58

44.0

-0.61

0.06

16.5

73

6

1

2

5

3

2

1

PTR 3 E

3

2.83

3.11

52.8

-2.85

-0.72

29.1

83

9

5

6

2

0

2

0

4

1.15

1.15

62.5

-2.00

-0.57

26.1

86

10

4

5

4

0

1

0

5

1.38

1.47

71.0

-1.09

-0.47

10.9

76

3

3

5

2

4

1

0

6

1.43

1.59

71.3

-1.16

-0.21

19.3

78

8

5

5

5

3

3

1

PTR 3 E

7

1.23

1.23

78.1

-2.07

-0.43

26.6

80

13

4

5

6

0

2

0

8

1.22

1.22

96.9

-1.11

-0.17

20.1

77

12

4

5

9

3

3

1

PTR 3 E

9

1.17

1.21

106.5

-0.48

-0.22

8.7

73

5

2

6

8

5

2

1

10

1.17

1.19

109.5

-1.29

-0.44

14.3

76

8

4

7

8

3

1

0

11

1.77

1.97

28.8

-0.43

-0.25

8.9

74

3

2

2

3

2

2

1

12

1.78

1.98

34.1

-1.18

-0.47

16.7

75

4

3

2

2

1

2

1

13

1.77

1.96

40.4

-0.38

-0.20

13.2

78

6

3

2

3

1

2

2

14

1.93

2.12

43.6

-0.50

-0.17

15.6

75

5

3

2

6

2

1

1

15

1.17

1.23

31.1

1.89

0.87

5.1

69

2

0

0

7

3

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.