PDBsum entry 5avt Go to PDB code:  Pore analysis for: 5avt calculated with MOLE 2.0 PDB id 5avt Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   13 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.32 1.33 39.3 -0.30 -0.39 9.2 82 2 1 3 6 1 1 1   2 2.71 3.72 39.4 -2.59 -0.59 35.9 85 7 3 1 1 0 0 0   3 1.26 1.42 41.2 -1.21 -0.14 23.9 83 6 4 3 2 0 2 0   4 1.63 1.80 41.7 -3.13 -0.63 36.8 75 7 5 1 0 1 0 0   5 1.33 1.33 53.0 -0.94 -0.43 16.1 81 6 2 4 4 2 1 1   6 1.31 1.44 53.5 -1.47 -0.22 22.3 82 7 4 4 3 1 2 0   7 1.61 2.29 57.6 -1.76 -0.43 22.4 80 6 5 3 2 4 2 0   8 1.26 1.41 58.6 -1.18 -0.25 21.6 87 8 3 4 3 0 2 0   9 1.32 1.32 59.7 -1.50 -0.42 23.1 85 7 4 6 5 1 0 1   10 1.21 1.25 116.0 -0.42 -0.04 13.1 82 8 5 4 12 4 1 0   11 1.21 1.25 115.6 -0.60 -0.13 16.0 86 7 5 5 13 3 0 0   12 1.21 1.24 162.4 -0.95 -0.20 18.7 81 10 9 6 12 7 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.