PDBsum entry 5avt Go to PDB code:  Tunnel analysis for: 5avt calculated with MOLE 2.0 PDB id 5avt Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.32 2.34 29.2 0.63 0.44 16.0 73 2 3 2 5 5 0 0   2 1.32 2.34 29.2 0.63 0.44 16.0 73 2 3 2 5 5 0 0   3 1.29 2.37 36.3 1.37 0.55 8.3 78 1 1 1 7 5 0 0   4 1.32 2.30 41.9 -0.44 0.23 21.4 78 4 4 2 6 5 1 0   5 1.29 2.37 36.3 1.37 0.55 8.3 78 1 1 1 7 5 0 0   6 1.32 2.30 41.9 -0.44 0.23 21.4 78 4 4 2 6 5 1 0   7 1.40 1.48 17.0 0.16 -0.01 8.0 84 1 1 3 2 1 0 0   8 1.19 2.14 15.4 -1.64 0.05 21.1 63 1 2 0 1 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.