 |
PDBsum entry 5agd
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 5agd calculated with  MOLE 2.0
|
PDB id
|
|
|
|
5agd
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
7 tunnels,
coloured by tunnel radius |
|
8 tunnels,
coloured by
tunnel radius
|
8 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.34 |
3.32 |
24.9 |
-2.70 |
-0.07 |
29.8 |
80 |
|
6 |
3 |
2 |
2 |
2 |
0 |
0 |
|
|
 |
|
2 |
 |
1.33 |
3.38 |
25.2 |
-2.27 |
-0.31 |
26.1 |
84 |
4 |
4 |
2 |
3 |
1 |
0 |
0 |
|
|
3 |
 |
1.33 |
3.56 |
19.7 |
-2.78 |
-0.28 |
25.5 |
83 |
4 |
3 |
4 |
2 |
1 |
0 |
0 |
|
|
4 |
 |
1.33 |
1.33 |
15.2 |
-2.47 |
-0.71 |
28.0 |
90 |
3 |
1 |
2 |
0 |
0 |
0 |
0 |
|
|
5 |
 |
1.32 |
1.34 |
17.8 |
-2.87 |
-0.60 |
29.9 |
76 |
4 |
4 |
1 |
0 |
1 |
1 |
0 |
|
|
6 |
 |
1.32 |
1.34 |
20.8 |
-2.18 |
-0.44 |
26.1 |
80 |
3 |
3 |
1 |
1 |
1 |
1 |
0 |
|
|
7 |
 |
1.34 |
1.53 |
15.9 |
-1.02 |
0.03 |
16.9 |
78 |
1 |
4 |
1 |
1 |
1 |
0 |
0 |
MAN 3 D MAN 4 D MAN 5 D
|
 |
8 |
 |
1.31 |
1.52 |
16.5 |
-1.40 |
0.18 |
17.9 |
68 |
0 |
4 |
1 |
1 |
3 |
0 |
0 |
MAN 500 B i:A MAN 2 D
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program