PDBsum entry 5afm Go to PDB code:  Tunnel analysis for: 5afm calculated with MOLE 2.0 PDB id 5afm Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 1.30 25.5 -0.32 0.14 2.2 62 0 0 4 2 4 1 1  L0B 1207 B 2 1.19 1.29 27.8 -0.23 0.14 2.5 65 1 0 4 3 3 1 2  L0B 1207 B 3 1.18 1.29 28.6 -0.91 0.01 10.9 63 0 3 2 2 4 1 1  L0B 1207 B 4 1.18 1.29 31.7 -1.09 0.32 9.7 62 3 0 1 3 5 2 0  L0B 1207 B 5 1.18 1.31 48.5 -0.36 0.06 2.2 74 0 0 5 5 5 3 0  L0B 1207 B 9Z0 1208 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.