PDBsum entry 5afh Go to PDB code:  Pore analysis for: 5afh calculated with MOLE 2.0 PDB id 5afh Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.62 47.2 -0.69 -0.12 6.6 76 0 2 7 6 5 2 0  L0B 1205 C 2 1.31 1.45 49.6 -0.75 -0.18 12.8 82 4 2 8 6 2 2 0   3 1.30 1.54 64.7 -0.20 -0.14 7.2 77 4 1 6 9 4 4 0  L0B 1205 B 4 1.31 1.52 70.5 -1.78 -0.33 22.7 79 6 5 4 2 3 1 0  NAG 2 F 5 1.31 1.55 72.3 -0.42 -0.26 7.5 78 2 2 8 8 4 6 0  L0B 1205 B 6 1.17 1.80 119.8 0.27 0.02 5.3 77 4 2 10 16 7 5 2  L0B 1205 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.