PDBsum entry 5abp Go to PDB code:  Tunnel analysis for: 5abp calculated with MOLE 2.0 PDB id 5abp Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 2.76 21.2 -2.38 -0.52 18.5 84 2 2 5 2 2 0 0  GLA 307 A 2 1.27 1.56 16.1 -1.24 -0.46 15.3 85 1 1 0 1 1 0 0   3 1.21 1.25 16.3 1.79 0.68 7.9 87 1 0 0 4 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.