PDBsum entry 5a5h

Pore analysis for: 5a5h calculated with

MOLE 2.0

PDB id

5a5h

Pores calculated on whole structure

Pores calculated excluding ligands

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12 pores, coloured by radius

14 pores, coloured by radius

14 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.67

2.72

29.0

-1.22

-0.33

17.2

71

3

1

2

3

1

1

0

2

1.14

1.24

33.7

0.77

0.22

6.7

71

2

0

2

6

0

2

1

3

1.50

1.98

37.0

-1.73

-0.31

18.8

91

3

2

6

5

1

0

0

4

3.07

3.07

47.5

-1.47

-0.52

19.5

81

5

3

8

5

2

0

0

5

3.05

3.06

50.5

-1.54

-0.54

19.7

82

6

3

8

5

1

1

0

6

1.32

2.69

65.4

-0.95

-0.35

21.4

89

4

6

5

6

1

1

0

7

1.73

2.64

66.2

-1.39

-0.47

19.7

78

6

4

7

6

3

0

0

8

1.57

1.62

80.2

-1.99

-0.65

17.6

82

4

3

9

3

0

3

0

9

1.96

3.06

82.5

-1.26

-0.39

20.4

85

9

5

10

6

0

1

0

10

2.41

3.49

106.3

-1.12

-0.47

13.8

93

3

4

12

8

1

0

0

11

1.33

1.38

117.3

-1.57

-0.43

19.9

92

7

7

13

6

1

0

0

12

1.49

1.99

120.6

-1.26

-0.45

12.5

88

6

4

11

6

4

0

0

13

1.19

1.28

160.3

-1.10

-0.37

13.0

84

5

8

17

10

5

0

0

MSE 73 C

14

1.15

2.14

34.6

-0.88

-0.20

22.4

87

4

5

4

2

1

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.