PDBsum entry 4zze

Pore analysis for: 4zze calculated with

MOLE 2.0

PDB id

4zze

Pores calculated on whole structure

Pores calculated excluding ligands

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2 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.19

1.20

31.8

-1.06

-0.33

14.5

92

2

2

6

4

1

0

0

2

3.83

5.30

35.8

-1.45

-0.65

9.0

98

1

4

12

3

1

0

0

3

1.22

1.22

36.1

-1.10

-0.41

18.1

87

2

4

4

5

1

1

0

MG 506 A

4

3.05

3.74

37.8

-1.32

-0.62

13.3

94

1

5

9

4

1

1

0

MG 506 A

5

1.23

1.22

41.8

-1.20

-0.16

12.5

85

1

2

7

3

4

0

0

MG 504 B GLC 1 D GLC 2 D GLC 3 D

6

1.19

1.19

44.7

-1.32

-0.38

14.0

88

3

1

7

4

2

1

0

7

1.22

1.23

48.8

-1.09

-0.12

13.9

79

3

2

7

4

5

0

0

MG 504 B GLC 1 D GLC 2 D GLC 3 D

8

1.22

1.23

65.8

-1.26

-0.36

15.4

82

2

6

7

6

5

1

0

MG 506 A MG 504 B GLC 1 D GLC 2 D GLC 3 D

9

1.21

1.21

67.3

-1.15

-0.22

14.7

79

3

5

7

6

7

0

0

MG 504 B GLC 1 D GLC 2 D GLC 3 D

10

1.17

2.90

128.2

-1.99

-0.58

23.9

83

5

9

5

5

1

2

0

MG 506 A CL 509 A CL 510 A

11

1.22

2.28

168.3

-1.70

-0.44

18.6

82

5

10

11

8

6

1

0

CL 509 A CL 510 A MG 504 B GLC 1 D GLC 2 D GLC 3 D

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.