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PDBsum entry 4zy2

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Pore analysis for: 4zy2 calculated with MOLE 2.0 PDB id
4zy2
Pores calculated on whole structure Pores calculated excluding ligands

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41 pores, coloured by radius 36 pores, coloured by radius 36 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.53 2.81 27.4 -2.25 -0.61 23.5 78 3 5 4 1 2 0 0  
2 1.56 2.83 35.7 -2.57 -0.48 26.4 80 8 4 3 1 2 0 0  1PE 1006 L
3 1.49 1.67 43.4 -2.18 -0.73 15.3 87 4 3 5 1 0 1 0  
4 3.22 4.13 51.9 -2.35 -0.44 29.2 86 13 4 4 4 0 0 0  
5 3.35 4.67 60.1 -3.05 -0.57 34.1 87 16 8 5 1 0 0 0  1PE 1006 L
6 1.69 2.28 71.1 -2.15 -0.53 23.8 86 12 5 7 2 2 0 0  
7 2.64 3.11 102.0 -1.71 -0.31 22.7 83 13 8 11 7 2 0 0  
8 1.89 2.00 116.9 -1.84 -0.49 20.6 80 10 8 12 3 4 1 0  SO4 1005 I
9 3.67 4.03 121.2 -1.58 -0.45 18.2 86 16 7 11 8 3 4 0  1PE 1006 L
10 3.35 4.63 125.0 -1.43 -0.43 16.6 86 15 7 13 9 4 4 0  
11 1.04 1.44 131.0 -0.81 -0.37 13.6 88 10 1 12 15 2 2 0  SO4 1004 J
12 2.61 3.24 130.0 -1.67 -0.40 25.4 83 18 11 8 7 1 2 0  
13 3.24 3.49 136.1 -1.75 -0.50 18.9 87 16 8 13 7 3 4 0  
14 3.24 4.16 136.9 -1.90 -0.51 20.9 87 17 9 13 6 2 4 0  1PE 1006 L
15 2.73 2.98 200.3 -1.58 -0.45 20.0 83 24 13 15 9 4 6 0  1PE 1006 L
16 2.80 3.34 199.5 -1.51 -0.44 19.5 83 23 12 14 10 5 6 0  
17 1.64 2.36 202.2 -1.72 -0.49 17.7 82 18 8 16 6 8 4 0  
18 1.11 1.18 216.1 -0.80 -0.34 16.1 84 19 8 15 17 3 4 0  SO4 1004 J
19 1.23 1.58 259.4 -1.80 -0.53 18.1 83 21 14 22 5 10 4 0  
20 1.81 2.79 45.0 -2.35 -0.51 24.8 85 7 4 5 2 1 0 0  SO4 1006 C
21 3.31 5.26 62.8 -2.67 -0.53 29.6 88 12 6 6 2 0 0 0  SO4 1006 C
22 1.44 1.62 103.3 -2.18 -0.56 22.6 82 16 8 7 3 2 1 0  
23 1.46 1.62 105.1 -2.01 -0.58 20.9 83 9 9 10 3 3 1 0  
24 2.03 2.05 114.5 -2.20 -0.55 24.8 85 14 7 11 4 1 1 0  
25 2.65 3.73 129.8 -1.90 -0.53 20.3 87 17 6 13 6 3 4 0  
26 2.85 3.39 134.5 -1.60 -0.48 17.8 86 17 6 14 8 3 4 0  
27 1.81 2.84 134.6 -1.83 -0.51 19.9 86 16 6 12 5 4 4 0  
28 1.81 2.84 139.2 -1.51 -0.48 17.0 84 16 6 13 7 4 4 0  
29 2.68 3.27 142.6 -2.06 -0.41 24.2 83 15 10 16 7 3 0 0  SO4 1004 E
30 2.04 2.01 153.0 -1.82 -0.59 17.6 86 17 5 13 5 3 5 0  
31 2.65 3.69 152.3 -1.89 -0.53 20.8 87 18 9 17 5 3 4 0  SO4 1006 C
32 1.81 2.81 157.8 -1.72 -0.57 16.6 85 16 5 12 4 4 5 0  
33 2.79 3.34 157.0 -1.65 -0.49 18.9 86 18 9 18 7 3 4 0  SO4 1006 C
34 1.49 1.70 166.6 -1.65 -0.52 17.0 84 20 8 12 8 5 5 0  
35 1.49 1.70 171.4 -1.60 -0.51 16.6 83 20 8 11 7 6 5 0  
36 1.88 1.98 175.5 -1.83 -0.58 18.6 87 18 8 17 4 3 5 0  SO4 1006 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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