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PDBsum entry 4zux

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Top Page protein dna_rna metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 4zux calculated with MOLE 2.0 PDB id
4zux
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.14 1.33 41.7 0.91 0.54 10.2 85 2 2 3 9 3 0 0  
2 1.13 1.41 42.4 0.17 0.03 14.4 79 4 1 4 6 2 1 1  
3 1.14 1.60 43.6 0.64 0.39 10.2 83 2 2 4 10 3 0 0  
4 1.15 1.41 44.4 0.08 -0.02 13.3 78 4 1 5 7 2 1 1  
5 1.67 1.67 19.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  DC -62 S DG -61 S DG -
60 S DG 62 T DG 63 T DG 64 T DA 65 T
6 1.37 1.46 15.9 0.13 -0.01 5.0 75 1 0 2 3 1 0 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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