 |
PDBsum entry 4zuk
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 4zuk calculated with MOLE 2.0
|
PDB id
|
|
|
|
4zuk
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
29 pores,
coloured by radius |
 |
16 pores,
coloured by radius
|
16 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.18 |
3.23 |
40.9 |
0.57 |
0.18 |
6.4 |
79 |
 |
2 |
2 |
3 |
6 |
5 |
1 |
1 |
 |
NAD 602 H
|
 |
 |
2 |
 |
1.87 |
2.59 |
46.9 |
-0.19 |
0.02 |
5.4 |
82 |
2 |
2 |
6 |
6 |
4 |
4 |
0 |
|
 |
3 |
 |
1.24 |
2.68 |
51.3 |
-0.24 |
-0.02 |
12.8 |
80 |
3 |
3 |
3 |
7 |
5 |
1 |
1 |
NAD 602 C
|
 |
4 |
 |
1.19 |
3.38 |
79.0 |
-0.56 |
-0.09 |
18.3 |
83 |
7 |
9 |
4 |
8 |
5 |
0 |
1 |
NAD 602 E
|
 |
5 |
 |
1.20 |
2.98 |
80.0 |
-0.37 |
-0.18 |
10.6 |
82 |
6 |
4 |
7 |
7 |
5 |
0 |
1 |
|
 |
6 |
 |
1.18 |
1.39 |
88.0 |
-1.06 |
-0.52 |
15.2 |
90 |
6 |
5 |
7 |
8 |
1 |
0 |
0 |
|
 |
7 |
 |
1.65 |
3.10 |
90.3 |
-1.86 |
-0.61 |
17.5 |
85 |
10 |
4 |
9 |
3 |
2 |
1 |
0 |
PG4 601 D NAD 602 D
|
 |
8 |
 |
1.27 |
2.69 |
97.0 |
-0.69 |
-0.10 |
19.1 |
82 |
8 |
11 |
5 |
11 |
5 |
0 |
1 |
NAD 602 B
|
 |
9 |
 |
1.14 |
2.65 |
98.4 |
-0.55 |
-0.08 |
11.9 |
80 |
7 |
4 |
6 |
7 |
6 |
2 |
1 |
NAD 602 F
|
 |
10 |
 |
1.19 |
3.33 |
100.1 |
0.08 |
0.09 |
10.7 |
79 |
5 |
7 |
7 |
12 |
10 |
0 |
2 |
NAD 602 B NAD 602 E
|
 |
11 |
 |
1.79 |
2.85 |
100.9 |
-0.10 |
0.05 |
8.9 |
84 |
5 |
4 |
8 |
10 |
4 |
4 |
0 |
|
 |
12 |
 |
1.80 |
2.68 |
146.5 |
-0.26 |
0.01 |
11.4 |
84 |
8 |
6 |
11 |
15 |
4 |
4 |
0 |
|
 |
13 |
 |
1.19 |
1.40 |
163.4 |
-0.77 |
-0.33 |
16.8 |
85 |
12 |
12 |
8 |
17 |
6 |
0 |
1 |
NAD 602 E
|
 |
14 |
 |
1.21 |
3.00 |
182.6 |
-0.39 |
-0.13 |
14.7 |
83 |
13 |
12 |
10 |
22 |
10 |
1 |
2 |
NAD 602 B NAD 602 F
|
 |
15 |
 |
1.22 |
1.39 |
187.2 |
-0.67 |
-0.30 |
15.9 |
84 |
13 |
12 |
8 |
20 |
6 |
1 |
1 |
NAD 602 B
|
 |
16 |
 |
1.85 |
2.72 |
45.0 |
-0.16 |
0.02 |
4.6 |
82 |
1 |
2 |
5 |
6 |
4 |
4 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |