spacer
spacer

PDBsum entry 4zpy

Go to PDB code: 
Top Page protein pores links
Pore analysis for: 4zpy calculated with MOLE 2.0 PDB id
4zpy
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 4.39 4.94 26.2 -0.20 0.07 8.7 80 2 1 3 4 2 1 0  
2 4.38 4.95 30.2 -0.55 -0.02 10.7 74 2 2 2 3 2 2 0  
3 2.04 3.29 32.8 -1.08 -0.18 20.6 85 3 2 2 3 1 1 0  
4 2.55 2.61 50.0 -1.05 -0.19 12.3 82 2 3 6 5 2 2 0  
5 2.18 3.02 90.0 -1.69 -0.31 23.0 85 6 6 4 4 5 0 0  
6 2.05 3.28 98.7 -1.33 -0.24 18.7 82 4 5 4 6 6 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer