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PDBsum entry 4zpv

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protein ligands Protein-protein interface(s) links
Viral protein/immune system PDB id
4zpv

 

 

 

 

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Contents
Protein chains
213 a.a.
212 a.a.
207 a.a.
Ligands
NAG ×2
PDB id:
4zpv
Name: Viral protein/immune system
Title: Structure of mers-coronavirus spike receptor-binding domain (england1 strain) in complex with vaccine-elicited murine neutralizing antibody d12 (crystal form 2)
Structure: D12 fab heavy chain. Chain: h, a. D12 fab light chain. Chain: l, b. Spike glycoprotein. Chain: s, r. Fragment: unp residues 381-588. Synonym: s glycoprotein,e2,peplomer protein. Engineered: yes
Source: Mus musculus. Mouse. Organism_taxid: 10090. Human coronavirus emc (isolate united kingdom/h123990006/2012). Hcov-emc. Organism_taxid: 1263720. Strain: isolate united kingdom/h123990006/2012. Gene: s, 3.
Resolution:
3.20Å     R-factor:   0.226     R-free:   0.281
Authors: M.G.Joyce,J.R.Mascola,B.S.Graham,P.D.Kwong
Key ref: L.Wang et al. (2015). Evaluation of candidate vaccine approaches for MERS-CoV. Nat Commun, 6, 7712. PubMed id: 26218507 DOI: 10.1038/ncomms8712
Date:
08-May-15     Release date:   21-Oct-15    
PROCHECK
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 Headers
 References

Protein chains
No UniProt id for this chain
Struc: 213 a.a.
Protein chains
No UniProt id for this chain
Struc: 212 a.a.
Protein chains
Pfam   ArchSchema ?
K9N5Q8  (SPIKE_CVEMC) -  Spike glycoprotein from Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012)
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1353 a.a.
207 a.a.
Key:    PfamA domain  Secondary structure  CATH domain

 

 
DOI no: 10.1038/ncomms8712 Nat Commun 6:7712 (2015)
PubMed id: 26218507  
 
 
Evaluation of candidate vaccine approaches for MERS-CoV.
L.Wang, W.Shi, M.G.Joyce, K.Modjarrad, Y.Zhang, K.Leung, C.R.Lees, T.Zhou, H.M.Yassine, M.Kanekiyo, Z.Y.Yang, X.Chen, M.M.Becker, M.Freeman, L.Vogel, J.C.Johnson, G.Olinger, J.P.Todd, U.Bagci, J.Solomon, D.J.Mollura, L.Hensley, P.Jahrling, M.R.Denison, S.S.Rao, K.Subbarao, P.D.Kwong, J.R.Mascola, W.P.Kong, B.S.Graham.
 
  ABSTRACT  
 
The emergence of Middle East respiratory syndrome coronavirus (MERS-CoV) as a cause of severe respiratory disease highlights the need for effective approaches to CoV vaccine development. Efforts focused solely on the receptor-binding domain (RBD) of the viral Spike (S) glycoprotein may not optimize neutralizing antibody (NAb) responses. Here we show that immunogens based on full-length S DNA and S1 subunit protein elicit robust serum-neutralizing activity against several MERS-CoV strains in mice and non-human primates. Serological analysis and isolation of murine monoclonal antibodies revealed that immunization elicits NAbs to RBD and, non-RBD portions of S1 and S2 subunit. Multiple neutralization mechanisms were demonstrated by solving the atomic structure of a NAb-RBD complex, through sequencing of neutralization escape viruses and by constructing MERS-CoV S variants for serological assays. Immunization of rhesus macaques confers protection against MERS-CoV-induced radiographic pneumonia, as assessed using computerized tomography, supporting this strategy as a promising approach for MERS-CoV vaccine development.
 

 

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