 |
PDBsum entry 4zoj
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 4zoj calculated with  MOLE 2.0
|
PDB id
|
|
|
|
4zoj
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
13 tunnels,
coloured by tunnel radius |
|
6 tunnels,
coloured by
tunnel radius
|
6 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.16 |
1.37 |
32.1 |
-0.44 |
-0.50 |
8.9 |
94 |
|
0 |
2 |
6 |
6 |
0 |
0 |
0 |
|
MG 400 B MG 401 B PRP 402 B
|
 |
|
2 |
 |
1.16 |
1.37 |
33.9 |
-0.31 |
-0.41 |
8.1 |
91 |
1 |
2 |
4 |
7 |
1 |
0 |
0 |
MG 400 B PRP 402 B 61L 403 B
|
|
3 |
 |
1.28 |
1.47 |
16.2 |
1.92 |
0.76 |
2.2 |
69 |
1 |
0 |
1 |
5 |
3 |
0 |
0 |
|
|
4 |
 |
1.10 |
2.28 |
16.3 |
0.99 |
0.06 |
1.6 |
100 |
0 |
0 |
1 |
5 |
0 |
0 |
0 |
|
|
5 |
 |
1.21 |
1.40 |
16.3 |
-0.05 |
-0.05 |
9.8 |
66 |
2 |
0 |
1 |
1 |
3 |
0 |
0 |
|
 |
6 |
 |
1.23 |
1.25 |
15.0 |
-0.74 |
-0.39 |
10.8 |
80 |
1 |
1 |
0 |
1 |
1 |
1 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program