PDBsum entry 4zmu

Tunnel analysis for: 4zmu calculated with

MOLE 2.0

PDB id

4zmu

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

5 tunnels, coloured by tunnel radius

5 tunnels, coloured by tunnel radius

5 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.46

1.68

16.4

1.33

0.57

4.2

73

1

0

2

5

2

2

0

2

1.46

1.67

20.9

1.25

0.37

3.4

74

1

1

2

5

2

2

0

3

1.21

2.38

16.6

0.33

0.47

18.2

80

3

2

1

4

1

1

0

4

1.21

2.43

21.4

1.63

0.48

3.1

81

1

0

1

8

1

1

0

5

1.30

2.97

15.3

2.00

0.73

0.9

72

0

0

1

6

3

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.