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PDBsum entry 4zm4

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Transferase PDB id
4zm4
Contents
Protein chains
418 a.a.
387 a.a.
Ligands
PLP ×4
P3B ×2
Waters ×767

References listed in PDB file
Key reference
Title Mechanism-Based trapping of the quinonoid intermediate by using the k276r mutant of plp-Dependent 3-Aminobenzoate synthase pctv in the biosynthesis of pactamycin.
Authors A.Hirayama, A.Miyanaga, F.Kudo, T.Eguchi.
Ref. Chembiochem, 2015, 16, 2484-2490. [DOI no: 10.1002/cbic.201500426]
PubMed id 26426567
Abstract
Mutational analysis of the pyridoxal 5'-phosphate (PLP)-dependent enzyme PctV was carried out to elucidate the multi-step reaction mechanism for the formation of 3-aminobenzoate (3-ABA) from 3-dehydroshikimate (3-DSA). Introduction of mutation K276R led to the accumulation of a quinonoid intermediate with an absorption maximum at 580 nm after the reaction of pyridoxamine 5'-phosphate (PMP) with 3-DSA. The chemical structure of this intermediate was supported by X-ray crystallographic analysis of the complex formed between the K276R mutant and the quinonoid intermediate. These results clearly show that a quinonoid intermediate is involved in the formation of 3-ABA. They also indicate that Lys276 (in the active site of PctV) plays multiple roles, including acid/base catalysis during the dehydration reaction of the quinonoid intermediate.
PROCHECK
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 Headers

 

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