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PDBsum entry 4zm0

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 4zm0 calculated with MOLE 2.0 PDB id
4zm0
Pores calculated on whole structure Pores calculated excluding ligands

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3 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.41 1.41 32.5 0.36 -0.08 8.9 85 2 1 3 4 1 0 0  DT 6 E DG 7 E DT 8 E DA 13 F
2 1.42 1.42 33.4 -1.67 -0.72 13.4 93 2 0 2 0 0 0 0  DT 6 E DG 7 E DT 8 E DT 14 E DT 5 F DG 6 F DT 7 F
DA 8 F DC 9 F DA 13 F
3 1.63 1.79 67.8 -0.57 -0.31 12.8 84 3 2 3 4 1 0 0  DT 6 E DG 7 E DT 8 E DT 14 E DT 5 F DG 6 F DT 7 F
DA 8 F DC 9 F

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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