 |
PDBsum entry 4zjo
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 4zjo calculated with MOLE 2.0
|
PDB id
|
|
|
|
4zjo
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
18 pores,
coloured by radius |
 |
30 pores,
coloured by radius
|
30 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.32 |
1.32 |
47.4 |
-0.92 |
-0.40 |
14.3 |
80 |
 |
6 |
4 |
3 |
6 |
2 |
1 |
0 |
 |
|
 |
 |
2 |
 |
1.60 |
1.87 |
65.5 |
-1.24 |
-0.42 |
18.2 |
82 |
6 |
7 |
3 |
7 |
2 |
1 |
0 |
|
 |
3 |
 |
2.08 |
2.08 |
78.9 |
-0.82 |
-0.55 |
10.1 |
86 |
2 |
6 |
7 |
7 |
2 |
3 |
0 |
ERY 1101 D
|
 |
4 |
 |
1.38 |
1.51 |
89.4 |
-0.95 |
-0.35 |
14.3 |
84 |
7 |
7 |
13 |
8 |
2 |
1 |
0 |
ERY 1101 D
|
 |
5 |
 |
1.42 |
2.83 |
97.1 |
-0.60 |
-0.47 |
8.4 |
88 |
4 |
6 |
5 |
6 |
3 |
1 |
0 |
|
 |
6 |
 |
2.11 |
2.11 |
106.0 |
-0.74 |
-0.41 |
10.3 |
85 |
2 |
7 |
9 |
12 |
3 |
4 |
0 |
ERY 1101 D
|
 |
7 |
 |
1.50 |
3.26 |
106.7 |
-0.86 |
-0.48 |
12.1 |
87 |
5 |
7 |
7 |
8 |
2 |
1 |
0 |
|
 |
8 |
 |
1.63 |
1.83 |
109.8 |
-1.27 |
-0.39 |
18.5 |
80 |
4 |
9 |
6 |
5 |
3 |
3 |
0 |
|
 |
9 |
 |
1.36 |
1.64 |
126.4 |
-1.25 |
-0.44 |
11.5 |
87 |
6 |
6 |
14 |
8 |
2 |
2 |
0 |
ERY 1101 D
|
 |
10 |
 |
1.35 |
1.46 |
143.8 |
-0.94 |
-0.40 |
13.5 |
87 |
8 |
10 |
14 |
13 |
3 |
1 |
0 |
|
 |
11 |
 |
1.37 |
1.40 |
143.6 |
-0.90 |
-0.41 |
12.7 |
84 |
8 |
7 |
12 |
11 |
5 |
2 |
0 |
|
 |
12 |
 |
1.43 |
1.52 |
165.1 |
-0.21 |
-0.05 |
9.9 |
77 |
9 |
5 |
9 |
17 |
13 |
3 |
0 |
|
 |
13 |
 |
1.30 |
1.56 |
179.4 |
0.21 |
-0.06 |
7.3 |
80 |
5 |
7 |
8 |
22 |
14 |
4 |
0 |
LMT 1101 B
|
 |
14 |
 |
1.46 |
1.68 |
177.8 |
-1.68 |
-0.60 |
16.9 |
84 |
11 |
8 |
11 |
7 |
4 |
2 |
0 |
|
 |
15 |
 |
1.35 |
2.78 |
189.5 |
0.17 |
0.09 |
12.2 |
80 |
10 |
8 |
10 |
25 |
11 |
4 |
0 |
|
 |
16 |
 |
1.27 |
1.37 |
214.1 |
-0.19 |
0.03 |
11.0 |
79 |
7 |
9 |
9 |
26 |
16 |
6 |
0 |
LMT 1101 B
|
 |
17 |
 |
1.74 |
1.80 |
227.6 |
-0.90 |
-0.47 |
11.6 |
83 |
12 |
12 |
15 |
14 |
10 |
3 |
0 |
|
 |
18 |
 |
1.44 |
1.64 |
223.7 |
-0.30 |
0.01 |
15.4 |
79 |
13 |
9 |
9 |
20 |
10 |
4 |
0 |
|
 |
19 |
 |
1.35 |
1.38 |
252.1 |
-0.58 |
-0.35 |
13.0 |
85 |
13 |
15 |
16 |
22 |
8 |
4 |
0 |
|
 |
20 |
 |
1.22 |
1.26 |
262.3 |
-0.97 |
-0.34 |
13.2 |
82 |
14 |
14 |
16 |
18 |
12 |
5 |
0 |
|
 |
21 |
 |
1.14 |
1.81 |
281.7 |
-0.81 |
-0.26 |
15.2 |
84 |
15 |
15 |
15 |
25 |
9 |
6 |
0 |
|
 |
22 |
 |
1.37 |
1.68 |
279.5 |
-0.60 |
-0.29 |
14.6 |
81 |
13 |
16 |
15 |
21 |
8 |
4 |
0 |
|
 |
23 |
 |
1.38 |
1.84 |
289.5 |
-0.59 |
-0.10 |
17.1 |
76 |
14 |
15 |
9 |
25 |
16 |
5 |
0 |
|
 |
24 |
 |
1.21 |
1.73 |
291.3 |
-1.21 |
-0.41 |
14.9 |
83 |
15 |
14 |
17 |
19 |
10 |
5 |
0 |
|
 |
25 |
 |
1.49 |
1.60 |
286.2 |
-0.99 |
-0.46 |
15.4 |
85 |
16 |
16 |
15 |
18 |
6 |
4 |
0 |
|
 |
26 |
 |
1.56 |
1.56 |
299.7 |
-1.10 |
-0.35 |
19.2 |
80 |
17 |
18 |
13 |
22 |
9 |
4 |
0 |
|
 |
27 |
 |
1.37 |
1.53 |
313.7 |
-1.07 |
-0.41 |
17.6 |
81 |
16 |
17 |
14 |
17 |
7 |
4 |
0 |
|
 |
28 |
 |
1.21 |
1.45 |
315.8 |
-1.23 |
-0.36 |
17.7 |
83 |
18 |
16 |
14 |
21 |
8 |
6 |
0 |
|
 |
29 |
 |
1.18 |
2.08 |
329.3 |
-1.28 |
-0.27 |
20.5 |
79 |
19 |
16 |
12 |
25 |
11 |
6 |
0 |
|
 |
30 |
 |
1.41 |
1.73 |
327.3 |
-1.34 |
-0.42 |
18.4 |
78 |
20 |
17 |
16 |
16 |
11 |
4 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |