spacer
spacer

PDBsum entry 4zgz

Go to PDB code: 
Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 4zgz calculated with MOLE 2.0 PDB id
4zgz
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
15 pores, coloured by radius 15 pores, coloured by radius 15 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.12 1.54 33.4 -0.03 0.18 13.3 64 4 1 1 5 2 2 1  
2 1.31 1.30 50.8 0.26 0.25 9.0 76 1 3 6 7 6 0 1  
3 1.21 1.58 51.6 0.37 -0.04 13.7 83 2 6 0 9 1 0 1  
4 1.84 1.84 57.7 0.37 0.23 13.6 80 3 3 2 7 3 0 0  
5 1.28 1.49 66.3 -1.16 -0.44 17.4 91 3 5 9 2 2 0 0  
6 1.28 1.49 76.3 0.41 0.12 8.3 83 2 2 4 8 4 0 0  
7 1.63 2.41 79.4 -1.69 -0.59 23.7 91 5 7 8 4 1 0 0  
8 1.32 1.65 85.2 0.37 0.29 11.2 80 4 6 6 19 6 2 0  
9 1.19 1.54 84.6 -0.92 -0.47 16.8 90 4 6 7 6 2 0 1  
10 1.24 1.47 101.0 -0.10 0.11 14.4 83 5 7 7 17 7 2 0  
11 1.11 1.22 120.9 0.49 0.16 11.0 80 5 5 3 15 5 1 0  
12 1.39 2.00 130.1 -0.04 -0.01 14.8 85 6 8 10 16 5 1 0  
13 1.05 1.34 140.0 0.05 -0.02 13.9 86 7 7 8 18 4 1 0  
14 1.97 2.33 145.6 -1.31 -0.39 16.5 84 4 7 7 9 2 3 0  
15 1.29 1.60 156.8 0.66 0.23 9.6 83 5 5 9 24 8 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer