PDBsum entry 4zfj Go to PDB code:  Tunnel analysis for: 4zfj calculated with MOLE 2.0 PDB id 4zfj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   12 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 1.66 29.2 -0.67 -0.43 11.7 96 4 0 4 3 0 0 1   2 1.31 1.33 30.3 -1.05 -0.50 15.9 94 3 1 3 4 0 0 1  MSE 94 L 3 1.31 2.20 31.1 -0.92 -0.47 14.8 95 3 2 4 3 0 0 1  MSE 94 L 4 1.13 1.26 30.1 0.87 0.17 7.9 76 2 2 1 11 3 0 0   5 1.30 1.37 18.8 -1.37 -0.41 24.7 81 2 3 1 4 1 0 0   6 1.31 1.37 23.8 -0.74 -0.39 19.1 83 2 3 1 5 1 0 0   7 1.33 1.33 34.9 -1.17 -0.54 20.9 82 3 3 1 6 1 1 0   8 1.11 1.23 24.2 0.34 -0.11 11.1 74 1 3 1 5 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.