PDBsum entry 4zdk Go to PDB code:  Tunnel analysis for: 4zdk calculated with MOLE 2.0 PDB id 4zdk Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.24 1.33 26.6 2.91 0.76 0.7 78 0 0 0 13 0 1 0   2 1.32 2.52 23.7 -0.36 -0.15 13.7 74 3 1 0 2 1 1 0   3 1.29 2.62 38.6 -0.29 -0.07 13.1 83 4 3 2 4 1 2 0  ACP 602 A 4 1.20 1.19 22.8 0.02 -0.09 13.2 87 2 3 3 7 2 0 0   5 1.18 2.38 17.0 2.29 0.55 1.5 80 0 1 0 8 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.