PDBsum entry 4zda Go to PDB code:  Tunnel analysis for: 4zda calculated with MOLE 2.0 PDB id 4zda Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.26 1.40 140.8 -1.58 -0.34 21.7 80 21 8 3 12 5 3 0   2 1.19 2.72 143.4 -1.29 -0.36 20.3 82 12 9 3 13 3 4 0   3 1.26 1.40 150.5 -1.66 -0.45 20.2 79 20 7 7 11 5 2 0   4 1.20 1.69 151.6 -1.41 -0.38 21.3 83 12 12 4 13 3 4 0   5 1.18 1.62 157.9 -1.70 -0.48 21.1 81 19 8 6 8 4 3 0   6 1.18 1.57 159.6 -1.66 -0.47 20.4 81 21 6 6 10 4 3 0   7 1.55 1.94 15.2 -2.25 -0.05 37.3 87 3 2 1 2 0 0 0   8 1.33 1.33 17.2 0.70 0.20 10.9 78 2 1 1 5 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.