PDBsum entry 4z9d Go to PDB code:  Tunnel analysis for: 4z9d calculated with MOLE 2.0 PDB id 4z9d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   12 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.31 1.31 26.7 -0.10 0.13 9.5 84 1 1 3 4 3 1 0   2 1.32 1.32 27.6 0.07 0.15 9.7 85 1 1 4 4 3 1 0   3 1.23 1.40 30.1 0.11 0.12 13.0 90 2 1 3 6 2 1 0   4 1.25 1.38 36.5 -0.33 0.03 13.6 89 5 1 3 6 2 1 0  NAD 202 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.