 |
PDBsum entry 4z8x
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 4z8x calculated with MOLE 2.0
|
PDB id
|
|
|
|
4z8x
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
14 pores,
coloured by radius |
 |
19 pores,
coloured by radius
|
19 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.35 |
1.35 |
25.4 |
-2.70 |
-0.64 |
29.2 |
79 |
 |
3 |
4 |
1 |
2 |
0 |
2 |
0 |
 |
|
 |
 |
2 |
 |
3.85 |
4.10 |
26.2 |
-1.69 |
-0.45 |
16.9 |
85 |
3 |
3 |
2 |
2 |
0 |
1 |
0 |
|
 |
3 |
 |
2.39 |
2.39 |
31.6 |
-2.42 |
-0.79 |
26.7 |
80 |
4 |
4 |
2 |
0 |
0 |
1 |
0 |
|
 |
4 |
 |
2.65 |
2.83 |
33.5 |
-2.33 |
-0.33 |
31.7 |
79 |
4 |
4 |
1 |
1 |
2 |
0 |
0 |
|
 |
5 |
 |
1.33 |
1.34 |
41.1 |
-2.45 |
-0.73 |
29.5 |
78 |
4 |
6 |
2 |
1 |
0 |
1 |
0 |
|
 |
6 |
 |
1.35 |
1.34 |
41.8 |
-2.58 |
-0.64 |
30.2 |
84 |
6 |
6 |
3 |
2 |
0 |
1 |
0 |
|
 |
7 |
 |
1.23 |
1.29 |
44.2 |
-2.33 |
-0.62 |
27.2 |
82 |
5 |
5 |
3 |
2 |
0 |
1 |
0 |
|
 |
8 |
 |
3.37 |
3.37 |
51.3 |
-2.58 |
-0.66 |
28.9 |
82 |
8 |
6 |
2 |
1 |
0 |
2 |
0 |
ADP 702 A
|
 |
9 |
 |
3.72 |
4.09 |
52.2 |
-2.34 |
-0.33 |
26.4 |
77 |
7 |
3 |
2 |
3 |
2 |
2 |
0 |
|
 |
10 |
 |
3.33 |
3.92 |
53.4 |
-2.38 |
-0.23 |
26.1 |
76 |
7 |
4 |
1 |
2 |
2 |
4 |
0 |
|
 |
11 |
 |
2.65 |
2.83 |
61.9 |
-2.43 |
-0.47 |
26.9 |
77 |
10 |
9 |
2 |
1 |
2 |
4 |
0 |
ADP 702 A
|
 |
12 |
 |
2.81 |
3.43 |
62.4 |
-2.58 |
-0.51 |
26.9 |
80 |
10 |
7 |
3 |
2 |
1 |
4 |
0 |
ADP 702 A
|
 |
13 |
 |
1.79 |
1.84 |
84.3 |
-2.18 |
-0.37 |
29.0 |
77 |
10 |
11 |
2 |
3 |
4 |
2 |
0 |
|
 |
14 |
 |
3.35 |
3.37 |
89.3 |
-2.53 |
-0.50 |
26.5 |
76 |
10 |
8 |
3 |
2 |
2 |
5 |
0 |
|
 |
15 |
 |
1.17 |
1.34 |
90.4 |
-1.18 |
-0.16 |
20.0 |
79 |
7 |
7 |
3 |
7 |
2 |
3 |
0 |
|
 |
16 |
 |
1.19 |
1.37 |
100.3 |
-1.06 |
-0.13 |
17.9 |
81 |
8 |
9 |
4 |
9 |
2 |
4 |
0 |
ADP 702 A
|
 |
17 |
 |
1.19 |
1.37 |
111.7 |
-1.37 |
-0.17 |
20.3 |
75 |
9 |
11 |
3 |
7 |
3 |
7 |
0 |
|
 |
18 |
 |
1.26 |
1.71 |
117.3 |
-1.39 |
-0.23 |
22.7 |
75 |
10 |
12 |
2 |
9 |
4 |
5 |
0 |
|
 |
19 |
 |
1.24 |
1.40 |
121.7 |
-1.32 |
-0.20 |
18.2 |
77 |
9 |
10 |
5 |
8 |
2 |
8 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |