PDBsum entry 4z8u Go to PDB code:  Tunnel analysis for: 4z8u calculated with MOLE 2.0 PDB id 4z8u Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 14 tunnels, coloured by tunnel radius 14 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.36 1.40 17.3 0.99 -0.03 2.4 75 1 0 1 8 1 0 0   2 1.48 1.89 25.6 -1.22 0.05 26.1 80 5 4 2 4 3 0 0  MSE 73 B 3 1.64 1.85 30.7 -1.53 -0.08 27.1 80 6 4 2 2 2 0 0  MSE 73 B 4 1.50 1.93 31.6 -0.48 0.07 18.3 81 3 2 4 7 3 1 0  MSE 73 B 5 1.41 1.94 33.4 -1.96 -0.55 28.3 84 4 4 3 2 1 1 0  SO4 501 A 6 1.67 1.93 34.1 -1.53 -0.33 25.2 87 4 5 6 1 2 0 0  SO4 501 A 7 1.59 1.67 35.2 -2.03 -0.58 26.2 85 5 5 4 1 1 1 0  SO4 501 A SO4 503 A GOL 506 A 8 1.68 1.85 36.7 -0.84 -0.08 20.1 81 4 2 4 5 2 1 0  MSE 73 B 9 1.41 1.93 43.0 -1.31 -0.23 24.3 81 4 5 3 5 4 1 0  SO4 501 A MSE 73 B 10 1.47 1.87 43.7 -0.96 -0.05 22.0 84 4 6 6 4 5 0 0  SO4 501 A MSE 73 B 11 1.50 1.94 44.8 -1.46 -0.29 23.2 82 5 6 4 4 4 1 0  SO4 501 A SO4 503 A GOL 506 A MSE 73 B 12 1.60 1.66 48.0 -2.36 -0.57 29.7 82 8 7 4 1 2 1 0  SO4 501 A SO4 502 A SO4 503 A 13 1.51 1.94 57.6 -1.83 -0.33 26.8 82 8 8 5 4 4 1 0  SO4 501 A SO4 502 A SO4 503 A MSE 73 B 14 1.61 1.66 60.2 -2.12 -0.54 23.9 84 8 7 7 3 1 2 0  SO4 501 A SO4 502 A SO4 503 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.