PDBsum entry 4z69

Pore analysis for: 4z69 calculated with

MOLE 2.0

PDB id

4z69

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

8 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.15

1.36

25.6

-0.93

0.26

22.6

77

5

1

1

3

1

0

0

F15 1001 I

2

2.54

2.58

30.2

-1.20

-0.56

16.9

91

2

3

4

1

1

0

0

3

1.29

1.53

30.4

1.59

0.48

4.3

73

1

1

0

5

3

0

0

F15 1005 A

4

1.39

1.39

37.4

-0.13

0.25

14.3

75

4

1

3

7

3

0

0

F15 1005 A

5

1.41

2.85

43.1

-1.04

-0.11

17.3

77

5

6

2

3

2

1

2

PLM 1002 I

6

1.44

2.50

56.5

-2.55

-0.43

34.1

81

9

7

4

5

2

1

0

7

2.67

3.58

57.1

-2.00

-0.36

27.9

83

8

11

3

2

2

1

0

8

1.10

1.76

61.5

-0.35

0.15

17.1

78

6

4

1

7

3

1

0

F15 1005 I

9

1.33

2.70

73.4

-0.16

0.28

13.7

77

8

1

2

13

5

2

0

F15 1001 A PLM 1004 A DIF 1006 A

10

1.85

3.24

98.9

-1.35

-0.20

24.6

81

14

10

5

13

3

0

0

11

2.17

2.16

115.8

-0.52

-0.03

19.7

82

11

11

6

14

4

2

0

F15 1003 A PLM 1004 A DIF 1008 A

12

1.31

2.82

196.8

-1.63

-0.20

26.3

80

18

19

10

16

8

4

0

F15 1001 A DIF 1006 A DIF 1008 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.