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PDBsum entry 4z53

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 4z53 calculated with MOLE 2.0 PDB id
4z53
Pores calculated on whole structure Pores calculated excluding ligands

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9 pores, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.44 1.81 26.5 -1.25 -0.31 16.0 79 2 5 2 0 6 0 0  
2 3.14 3.30 59.1 -1.41 -0.35 19.9 78 4 8 3 3 4 0 0  
3 1.61 1.95 61.2 -1.94 -0.68 23.5 81 6 8 1 1 1 1 0  DT 15 E DC 4 F DA 5 F TR6 101 F DG 1 H DA 2 H DC
3 H
4 2.11 2.27 62.6 -1.44 -0.30 21.1 79 4 6 2 3 5 1 0  
5 1.59 1.93 81.9 -1.70 -0.62 18.8 82 8 10 5 2 4 5 0  MG 1501 B DA 1 F DT 11 G DG 12 G DA 14 G DT 15 G
DC 3 H DT 4 H DA 5 H TR6 101 H
6 1.77 1.86 83.3 -1.62 -0.48 18.0 80 5 12 3 1 6 4 0  MG 1501 A DT 11 E DT 15 E DT 3 F DC 4 F DA 5 F
TR6 101 F DG 1 H
7 1.96 1.96 85.5 -1.57 -0.64 15.4 83 12 9 7 3 5 7 0  MG 1501 B DA 1 F DT 11 G DG 12 G DA 14 G DT 15 G
DC 3 H DT 4 H DA 5 H TR6 101 H
8 1.86 2.06 90.6 -1.74 -0.61 18.0 85 15 9 10 3 4 6 0  MG 1501 A DT 11 E DT 15 E DT 3 F DC 4 F DA 5 F
TR6 101 F DG 1 H
9 1.77 1.88 102.5 -1.42 -0.32 17.2 76 7 14 2 3 13 5 0  MG 1501 A MG 1501 B DT 15 E DA 1 F DG 2 F DT 3 F
TR6 101 F DT 15 G DG 1 H DA 2 H DC 3 H TR6 101 H
10 1.59 1.92 108.0 -1.79 -0.73 20.2 88 6 18 6 4 0 5 0  DA 1 F DG 2 F DT 3 F DC 4 F DT 11 G DG 1 H DA 2 H
DC 3 H DT 4 H
11 1.93 2.14 112.1 -1.59 -0.44 20.2 80 16 10 3 4 7 6 0  MG 1501 A MG 1501 B DT 15 E DA 1 F DG 2 F DT 3 F
TR6 101 F DT 15 G DG 1 H DA 2 H DC 3 H TR6 101 H

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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