spacer
spacer

PDBsum entry 4z4q
Go to PDB code: 
Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 4z4q calculated with MOLE 2.0 PDB id
4z4q
Pores calculated on whole structure Pores calculated excluding ligands
View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
15 pores, coloured by radius 15 pores, coloured by radius 15 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.43 1.43 26.0 -1.89 -0.39 21.9 77 5 4 2 1 5 0 0  
2 1.56 1.70 26.8 -1.99 -0.61 24.8 85 5 4 2 1 0 1 0  
3 1.90 2.66 27.9 -1.75 -0.58 15.9 88 6 2 8 2 1 2 0  
4 1.56 1.71 31.3 -2.02 -0.67 14.8 88 5 5 7 1 1 1 0  
5 1.55 1.54 70.3 -1.51 -0.70 15.8 86 3 9 4 3 1 6 0  MG 1502 B DT 10 E DA 11 E DA 1 F DA 2 F DC 3 F DC
4 F DT 15 G DG 1 H DG 2 H DT 3 H DT 4 H PDQ 101 H
6 1.60 1.70 71.8 -1.92 -0.66 23.6 82 7 9 1 1 1 1 0  DC 15 E DC 4 F DG 5 F PDQ 101 F DG 1 H DG 2 H DT
3 H
7 1.54 1.53 75.8 -1.66 -0.67 19.1 84 6 9 3 1 1 5 0  MG 1502 B DA 1 F DG 10 G DT 11 G DA 14 G DT 15 G
DT 3 H DT 4 H DA 5 H DT 6 H PDQ 101 H
8 1.69 1.68 77.0 -1.39 -0.43 16.2 79 6 8 3 2 4 5 0  DT 10 E DA 11 E DC 15 E DC 3 F DC 4 F DG 5 F DT 6
F PDQ 101 F DG 1 H
9 1.51 1.51 78.1 -1.51 -0.63 14.6 86 8 8 10 3 2 6 0  MG 1502 B DA 1 F DG 10 G DT 11 G DA 14 G DT 15 G
DT 3 H DT 4 H DA 5 H DT 6 H PDQ 101 H
10 1.60 1.71 91.5 -1.58 -0.74 17.5 88 4 13 6 4 0 5 0  DT 10 E DA 11 E DA 1 F DA 2 F DC 3 F DC 4 F DG 10
G DT 11 G DG 1 H DG 2 H DT 3 H DT 4 H
11 1.86 3.22 91.2 -1.20 -0.56 15.4 82 4 7 2 5 2 1 0  DG 9 E DT 10 E DA 11 E DC 3 F DC 4 F DG 5 F DT 6
F DA 7 F DA 10 F DC 11 F
12 2.05 2.25 93.9 -1.49 -0.69 14.5 89 6 12 12 6 1 6 0  DT 10 E DA 11 E DA 1 F DA 2 F DC 3 F DC 4 F DG 10
G DT 11 G DG 1 H DG 2 H DT 3 H DT 4 H
13 1.59 1.60 101.6 -1.51 -0.44 19.4 80 8 10 2 3 5 6 0  MG 1502 B DC 15 E DA 1 F DA 2 F DC 3 F DC 4 F PDQ
101 F DT 15 G DG 1 H DG 2 H DT 3 H DT 4 H PDQ 101
H
14 1.65 1.66 105.0 -1.59 -0.50 18.6 82 12 10 7 5 5 3 0  DC 15 E DC 4 F DG 5 F PDQ 101 F DG 1 H DG 2 H DT
3 H
15 1.81 1.81 106.3 -1.42 -0.48 20.4 79 5 6 1 4 3 2 0  DG 9 E DT 10 E DA 11 E DC 15 E DC 4 F DG 5 F DT 6
F DA 7 F DA 10 F DC 11 F PDQ 101 F DG 1 H

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer