PDBsum entry 4z47 Go to PDB code:  Tunnel analysis for: 4z47 calculated with MOLE 2.0 PDB id 4z47 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.85 1.93 19.6 -2.75 -0.80 36.5 73 2 1 0 0 0 0 0  DT 7 C DG 8 C DT 9 C DT 19 D DA 20 D DC 21 D 2 1.96 1.96 21.6 -1.94 -0.81 20.5 81 2 1 1 0 0 0 0  DC 4 C DT 5 C DC 6 C DT 19 D DA 20 D DC 21 D DA 22 D 3 1.86 1.93 21.6 -1.27 -0.54 21.2 82 2 1 1 1 1 0 0  DT 7 C DG 8 C DT 19 D DA 20 D DC 21 D 4 1.99 1.99 21.7 -1.78 -0.79 21.3 82 1 2 1 0 0 0 0  DT 19 D DA 20 D DC 21 D 5 1.52 2.30 27.1 -0.40 -0.22 17.9 82 3 1 2 3 0 1 0  DT 19 D DA 20 D DC 21 D 6 1.31 1.48 25.8 -0.85 -0.26 9.8 80 2 1 2 2 2 0 0  ACY 404 A DA 16 D ORP 17 D DG 18 D 7 1.31 1.48 34.4 -0.38 -0.13 5.2 75 2 0 2 3 2 2 0  ACY 404 A DG 16 C DC 17 C DA 16 D ORP 17 D 8 1.31 1.48 34.5 -0.23 -0.10 5.8 72 1 1 2 4 3 2 0  ACY 404 A DC 17 C DC 15 D DA 16 D ORP 17 D 9 2.49 2.49 15.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  DA 19 C DT 20 C DG 21 C DG 22 C DA 23 C DC 24 C D A 9 D DT 10 D DC 11 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.