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PDBsum entry 4z3o

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Top Page protein dna_rna ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 4z3o calculated with MOLE 2.0 PDB id
4z3o
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.28 1.38 39.5 0.12 -0.01 11.6 88 3 3 4 7 2 1 0  DG 10 G DT 11 G DG 12 G DC 13 G DG 7 H DC 8 H DG
11 H
2 1.11 1.11 15.6 1.67 0.69 11.4 87 2 2 0 10 0 0 0  
3 1.46 1.59 16.9 2.92 0.87 2.0 79 2 0 1 13 0 0 0  
4 1.29 1.72 18.7 3.21 0.95 1.3 84 2 0 1 10 0 0 0  
5 1.19 1.25 26.3 2.30 0.72 5.6 79 4 0 2 16 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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