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PDBsum entry 4z2c
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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 4z2c calculated with MOLE 2.0 PDB id
4z2c
Pores calculated on whole structure Pores calculated excluding ligands
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12 pores, coloured by radius 21 pores, coloured by radius 21 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.51 1.72 26.0 -0.57 -0.32 8.6 87 1 2 3 2 1 0 0  
2 1.57 1.73 34.8 -2.27 -0.80 24.6 88 3 4 3 0 0 0 0  
3 1.30 1.35 43.4 0.31 -0.11 4.1 88 2 0 2 7 2 0 0  DG 9 G DT 10 G DA 10 H DC 11 H
4 1.83 1.83 52.2 -1.65 -0.42 22.0 86 6 5 3 3 1 0 0  
5 1.11 1.25 52.2 1.04 0.25 8.3 88 2 2 3 13 2 0 0  
6 1.43 2.15 66.3 -1.29 -0.42 13.8 80 2 5 4 2 4 0 0  DG 1 F DA 2 F MFX 101 F DT 11 G DG 12 G DT 13 G D
A 14 G DT 15 G MG 101 G DT 3 H DC 4 H DA 5 H
7 1.33 1.32 76.6 -0.21 -0.22 11.5 84 4 3 3 11 4 0 0  DG 9 G DT 10 G DT 3 H DC 4 H
8 1.78 1.96 76.9 -1.02 -0.57 11.6 89 4 3 4 4 1 0 0  DG 9 G DT 10 G DT 3 H DC 4 H DA 10 H DC 11 H
9 1.82 1.82 79.7 -1.05 -0.69 9.0 91 3 2 4 1 1 0 0  DG 1 F DA 2 F MFX 101 F DG 9 G DT 10 G DT 11 G DT
13 G DA 14 G DT 15 G MG 101 G DT 3 H DC 4 H DA 5
H DA 10 H DC 11 H
10 1.43 2.20 85.6 -1.47 -0.71 17.9 87 5 9 4 2 2 0 0  DG 1 F DA 2 F MFX 101 F DT 10 G DT 11 G DT 13 G D
A 14 G DT 15 G MG 101 G DT 3 H DC 4 H DA 5 H
11 1.58 1.76 87.3 -1.62 -0.71 18.4 90 6 5 4 1 0 0 0  DG 9 G DT 10 G DT 3 H DC 4 H DA 10 H DC 11 H
12 1.43 2.22 88.9 -1.39 -0.69 16.0 81 3 7 1 1 2 0 0  DA 7 E DC 8 E DG 9 E DT 10 E DT 11 E DG 1 F DA 2
F DT 3 F DC 4 F DA 5 F DT 6 F DA 7 F DA 10 F DC
11 F DG 12 F MFX 101 F DT 15 G DC 4 H DA 5 H
13 1.52 1.77 92.9 -1.10 -0.46 8.6 83 2 5 8 3 4 0 0  DA 7 E DC 8 E DG 9 E DT 10 E DT 11 E DT 13 E DG 1
F DA 2 F DT 3 F DC 4 F DA 5 F DT 6 F DA 7 F DA 10
F DC 11 F DG 12 F DT 11 G DG 12 G DT 13 G MG 101
G DG 1 H DA 2 H DT 3 H MG 102 H
14 1.34 1.30 92.9 -0.64 -0.33 14.4 83 4 6 2 7 5 0 0  DG 1 F DA 2 F MFX 101 F DG 9 G DT 10 G DT 11 G DT
13 G DA 14 G DT 15 G MG 101 G DT 3 H DC 4 H DA 5 H
15 1.78 2.00 93.3 -1.31 -0.60 14.3 92 4 2 3 2 0 0 0  DG 9 G DT 10 G DT 3 H DC 4 H DA 10 H DC 11 H
16 1.33 1.35 93.0 -0.22 -0.16 13.6 85 4 2 2 9 3 0 0  DG 9 G DT 10 G DT 3 H DC 4 H
17 1.43 2.15 100.1 -1.34 -0.61 17.3 87 2 7 3 2 2 0 0  DG 1 F DA 2 F MFX 101 F DT 10 G DT 11 G DT 13 G D
A 14 G DT 15 G MG 101 G DT 3 H DC 4 H DA 5 H
18 1.65 1.83 107.0 -1.44 -0.75 13.9 89 5 8 8 3 2 0 0  DA 7 E DC 8 E DG 9 E DT 10 E DT 11 E DT 13 E DG 1
F DA 2 F DT 3 F DC 4 F DA 5 F DT 6 F DA 7 F DA 10
F DC 11 F DG 12 F DT 10 G DT 11 G DT 13 G MG 101
G DG 1 H DA 2 H DT 3 H DC 4 H MG 102 H
19 2.22 2.22 120.5 -1.32 -0.69 12.0 87 2 6 7 2 2 1 0  DA 7 E DC 8 E DG 9 E DT 10 E DT 11 E DT 13 E DG 1
F DA 2 F DT 3 F DC 4 F DA 5 F DT 6 F DA 7 F DA 10
F DC 11 F DG 12 F DT 10 G DT 11 G DT 13 G MG 101
G DG 1 H DA 2 H DT 3 H DC 4 H MG 102 H
20 1.87 1.99 120.1 -1.16 -0.68 8.8 89 4 5 8 2 2 0 0  DA 7 E DC 8 E DG 9 E DT 10 E DT 11 E DT 13 E DG 1
F DA 2 F DT 3 F DC 4 F DA 5 F DT 6 F DA 7 F DA 10
F DC 11 F DG 12 F DG 9 G DT 10 G DT 11 G DT 13 G
MG 101 G DG 1 H DA 2 H DT 3 H DC 4 H DA 10 H DC
11 H MG 102 H
21 1.29 1.38 119.8 -0.54 -0.40 9.1 84 4 5 7 9 5 0 0  DA 7 E DC 8 E DG 9 E DT 10 E DT 11 E DT 13 E DG 1
F DA 2 F DT 3 F DC 4 F DA 5 F DT 6 F DA 7 F DA 10
F DC 11 F DG 12 F DG 9 G DT 10 G DT 11 G DT 13 G
MG 101 G DG 1 H DA 2 H DT 3 H DC 4 H MG 102 H

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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