PDBsum entry 4z10

Tunnel analysis for: 4z10 calculated with

MOLE 2.0

PDB id

4z10

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

13 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.38

1.58

18.7

-0.47

-0.19

6.2

73

1

1

2

1

3

2

0

2

1.40

1.58

16.6

-0.32

-0.01

5.7

70

1

1

2

1

4

2

0

3

1.22

1.37

20.6

-0.96

-0.26

9.1

78

3

1

2

2

1

3

0

4

1.30

1.47

21.9

-0.40

-0.15

6.7

73

1

1

2

1

3

2

0

5

1.48

1.62

17.2

-0.10

0.15

5.2

69

1

1

2

1

4

3

0

6

1.21

1.23

15.4

-2.19

-0.52

22.5

79

1

2

3

0

2

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.