 |
PDBsum entry 4z0c
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 4z0c calculated with MOLE 2.0
|
PDB id
|
|
|
|
4z0c
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
10 pores,
coloured by radius |
 |
3 pores,
coloured by radius
|
3 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.10 |
2.37 |
45.7 |
-1.71 |
-0.39 |
24.6 |
90 |
 |
4 |
1 |
1 |
1 |
1 |
0 |
0 |
 |
DC 2 B DG 4 B DA 9 B DC 10 B DC 11 B DC 12 B DC 13 B
|
 |
 |
2 |
 |
1.83 |
1.83 |
46.9 |
-1.65 |
-0.30 |
19.1 |
76 |
9 |
1 |
2 |
0 |
3 |
2 |
0 |
DA 1 C DC 2 C DG 4 C DG 8 C DA 9 C DC 10 C DC 12 C
|
 |
3 |
 |
1.23 |
2.51 |
81.8 |
-1.63 |
-0.28 |
20.5 |
77 |
11 |
1 |
2 |
1 |
5 |
2 |
0 |
DG 4 B DG 8 B DA 9 B DC 10 B DA 1 C DC 2 C
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |