PDBsum entry 4yyc Go to PDB code:  Tunnel analysis for: 4yyc calculated with MOLE 2.0 PDB id 4yyc Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.07 1.33 39.0 0.69 -0.04 6.0 87 3 1 2 8 3 0 0  MSE 195 A MSE 223 A 2 1.61 1.66 15.9 -0.19 -0.51 3.4 82 1 0 2 1 2 1 0  MSE 379 A 3 1.15 1.26 23.0 -1.30 -0.68 15.2 89 2 1 2 1 0 1 0  MSE 173 A 4 1.27 1.34 15.3 -0.34 -0.34 14.6 84 1 2 0 3 1 0 0  MSE 249 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.