PDBsum entry 4yhh Go to PDB code:  Tunnel analysis for: 4yhh calculated with MOLE 2.0 PDB id 4yhh Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.37 2.74 16.0 0.52 0.47 18.2 89 1 2 0 5 1 0 0   2 1.39 1.72 18.6 -0.07 0.45 12.1 87 2 0 0 5 1 0 0  G 685 A U 686 A 3 1.34 1.39 16.3 -0.38 -0.06 20.2 74 3 1 0 2 1 0 0   4 1.33 1.40 24.4 3.12 0.89 1.1 94 1 0 1 11 0 0 0   5 1.28 1.28 18.6 -0.48 -0.47 8.3 84 1 0 1 1 1 0 0  G 597 A U 598 A C 599 A C 600 A C 601 A G 639 A A 642 A C 643 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.