PDBsum entry 4ydk Go to PDB code:  Pore analysis for: 4ydk calculated with MOLE 2.0 PDB id 4ydk Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.37 2.63 26.9 0.49 0.18 8.3 79 0 1 1 5 1 2 0   2 1.53 1.53 34.5 -1.38 -0.72 18.8 99 2 3 4 1 0 0 0  GOL 307 L 3 2.51 2.51 43.4 -1.84 -0.77 20.6 93 2 3 6 0 1 0 0  PEG 301 L GOL 307 L 4 2.80 2.95 50.2 -1.74 -0.55 13.2 79 2 3 6 2 1 3 0  PEG 301 L 5 1.32 1.57 37.3 -0.76 0.10 10.2 77 4 2 5 4 5 1 1  NAG 503 G 6 1.44 2.07 27.2 -0.79 -0.26 9.6 73 2 1 1 4 2 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.