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PDBsum entry 4y2o

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Pore analysis for: 4y2o calculated with MOLE 2.0 PDB id
4y2o
Pores calculated on whole structure Pores calculated excluding ligands

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5 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.15 2.64 35.1 2.97 0.94 0.6 76 0 0 0 14 3 1 0  
2 1.35 1.58 38.8 0.93 0.15 4.2 80 1 0 3 12 1 2 0  PGE 302 A
3 1.20 1.34 45.3 -1.35 -0.36 23.4 84 3 4 2 3 1 0 0  PGE 301 A
4 1.28 1.28 50.7 -0.75 -0.15 12.3 88 3 1 5 7 2 0 0  
5 1.29 1.28 63.2 0.82 0.28 8.5 78 2 1 3 14 2 2 0  
6 1.23 3.96 88.9 0.76 0.24 9.4 75 2 2 2 15 4 1 0  
7 1.22 1.63 92.6 -0.39 0.05 16.3 80 6 7 2 17 3 2 0  NI 202 B
8 1.17 2.80 105.1 1.24 0.44 7.2 76 2 2 2 21 7 0 0  
9 1.28 4.58 109.1 0.23 0.03 8.9 80 3 2 5 18 5 1 0  PGE 302 A
10 1.24 2.07 123.8 -0.40 0.08 16.5 83 7 6 5 21 4 1 0  NI 202 B
11 1.20 1.22 155.5 0.58 0.26 10.1 82 6 5 4 29 5 0 0  
12 1.19 1.33 175.8 -0.04 0.05 13.0 85 8 6 7 28 3 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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